WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55A4.8b.1 Sequence Name  F55A4.8b.1
Length (nt)  1751   Chromosome Location  X: 1038514-1044404
Chromosome . Primary Identifier  X Chromosome Location . Start  1038514
Chromosome Location . End  1044404 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55A4.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018860 vpat-1 F55A4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55A4.8b F55A4.8b 1461   X: 1038692-1038739

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F55A4.8b.1 1038514 1044404 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223415   226   X: 1038514-1038739 Caenorhabditis elegans
Exon223419   94   X: 1038809-1038902 Caenorhabditis elegans
Exon223422   75   X: 1038957-1039031 Caenorhabditis elegans
Exon223426   96   X: 1039755-1039850 Caenorhabditis elegans
Exon223428   197   X: 1039900-1040096 Caenorhabditis elegans
Exon223431   140   X: 1040157-1040296 Caenorhabditis elegans
Exon223434   160   X: 1040565-1040724 Caenorhabditis elegans
Exon223437   148   X: 1040772-1040919 Caenorhabditis elegans
Exon223440   74   X: 1041059-1041132 Caenorhabditis elegans
Exon223443   219   X: 1041187-1041405 Caenorhabditis elegans
Exon223446   40   X: 1041453-1041492 Caenorhabditis elegans
Exon223449   159   X: 1041688-1041846 Caenorhabditis elegans
Exon223452   123   X: 1044282-1044404 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F55A4.8b.1 1038514 1044404 -1

1 Sequence

Length
1751

1 Sequence Ontology Term

Identifier Name Description
transcript