WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219645 Gene Name  linc-166
Sequence Name  ? C02H7.6 Organism  Caenorhabditis elegans
Automated Description  Enriched in AVAL; AVBL; PVPL; and neurons based on RNA-seq and single-cell RNA-seq studies. Biotype  SO:0001641
Genetic Position  X :-19.5042± Length (nt)  ? 5143
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219645

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C02H7.6 C02H7.6 3004   X: 737234-742376
 

Other

0 CDSs

0 RNAi Result

70 Allele

Public Name
gk963652
gk963725
WBVar01757045
gk963812
WBVar00074481
WBVar00074485
WBVar00074484
WBVar00074483
WBVar00074482
WBVar00074486
WBVar01979079
WBVar01979078
WBVar01992475
WBVar01992476
WBVar01954459
cxTi10926
WBVar01986958
WBVar01986957
WBVar01417328
WBVar01823982
WBVar01823981
WBVar01823980
gk469048
gk340749
gk517717
gk421190
h5598
gk398781
h5599
WBVar01467360

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219645 737234 742376 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_742377..750575   8199 X: 742377-750575 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly increased expression after 24 hours of infection by Pseudomonas donghuensis HYS, comparing to control animals exposed to OP50. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:HYS_vs_OP50_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated
  Single-cell RNA-Seq cell group 50_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:50_0
  Single-cell RNA-Seq cell group 61_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:61_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219645 737234 742376 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
5143

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_735673..737233   1561 X: 735673-737233 Caenorhabditis elegans