WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201656 Gene Name  CE7X_3.3
Sequence Name  ? CE7X_3.3 Organism  Caenorhabditis elegans
Automated Description  Is affected by mafr-1; lag-1; and glp-1 based on microarray and RNA-seq studies. Is affected by silicon dioxide nanoparticle based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 150
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201656

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CE7X_3.3 CE7X_3.3 150   X: 13494-13643
 

Other

0 CDSs

0 RNAi Result

7 Allele

Public Name
gk962800
gk964321
WBVar02123863
gk963641
gk962812
WBVar02122405
WBVar02121670

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201656 13494 13643 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs). The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group. WBPaper00060100:SiNP_upregulated_mRNA
  Transcripts that showed significantly decreased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. Fold change > 2, FDR < 0.01. WBPaper00065993:glp-1(e2141)_downregulated
  Transcripts that showed significantly decreased expression in mafr-1(tm6082) (gain of function) animals comparing to in N2. Student's t-test. Fold Change > = 2. WBPaper00050522:mafr-1(tm6082)_downregulated
  Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_germline
  Transcripts interacting with LAG-1 at L4 larva stage in whole animal ChIP-Seq analysis. edgeR fold change >= 2, FDR <= 0.05. WBPaper00059440:LAG-1_interacting_WholeAnimal

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201656 13494 13643 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
150

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region