WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201730 Gene Name  F38A6.8
Sequence Name  ? F38A6.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in CEPsoDL; arcade cell; and posterior arcade cell based on single-cell RNA-seq studies. Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 297
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201730

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F38A6.8 F38A6.8 297   V: 20763537-20763833
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk963271
gk964176
gk962705
gk963489
gk963304
gk963809
WBVar00073881
gk267887
gk267888
gk663328
gk382485

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201730 20763537 20763833 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20763834..20764970   1137 V: 20763834-20764970 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Single-cell RNA-Seq cell group 15_0 expressed in epithelium. scVI 0.6.0 WBPaper00065841:15_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201730 20763537 20763833 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
297

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20760318..20763536   3219 V: 20760318-20763536 Caenorhabditis elegans