WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219585 Gene Name  linc-170
Sequence Name  ? F26F2.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by Tunicamycin and Tamoxifen based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  V :25.0161± Length (nt)  ? 214
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219585

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F26F2.14 F26F2.14 172   V: 20596009-20596222
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00015052

23 Allele

Public Name
gk963271
WBVar02124844
gk964176
gk962705
gk963489
gk963304
WBVar02122714
WBVar02124642
gk963809
WBVar02121339
WBVar02124290
otn12535
otn12536
WBVar00073488
WBVar00073487
WBVar00073486
WBVar00073485
WBVar02091709
gk773369
WBVar01914100
WBVar01599528
WBVar01599529
WBVar01599530

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219585 20596009 20596222 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline. Log2 Fold change > 2 or <-1, p-value < 0.05. WBPaper00053599:female_vs_male_downregulated
  Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage. DEseq2, fold change > 2 WBPaper00064505:tamoxifen_downregulated
  Transcripts that showed significantly increased expression after 4 hours of treatment by 50 ub per ml tunicamycin at L4 larva stage in wild type animals. Fold change > 1.75 WBPaper00045971:tunicamycin_upregulated_control

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219585 20596009 20596222 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
214

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20595754..20596008   255 V: 20595754-20596008 Caenorhabditis elegans