WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198579 Gene Name  Y38H6A.8
Sequence Name  ? Y38H6A.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by ifo-1 based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 60
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198579

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y38H6A.8 Y38H6A.8 60   V: 20339032-20339091
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk963271
WBVar02124844
gk964176
gk962705
gk963489
gk963304
WBVar02122714
WBVar02124642
gk963809

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198579 20339032 20339091 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20339092..20345188   6097 V: 20339092-20345188 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ifo-1(kc2) comparing to in N2 animals. ANOVA, p-value < 0.05. WBPaper00056167:ifo-1(kc2)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198579 20339032 20339091 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
60

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20338333..20339031   699 V: 20338333-20339031 Caenorhabditis elegans