WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219632 Gene Name  linc-163
Sequence Name  ? Y113G7B.30 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Is affected by alh-4 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  V :24.9687± Length (nt)  ? 1245
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219632

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y113G7B.30 Y113G7B.30 988   V: 20217904-20219148
 

Other

0 CDSs

0 RNAi Result

156 Allele

Public Name
gk963271
WBVar02124844
gk964176
gk962705
gk963489
gk963304
WBVar02122714
WBVar02124642
gk963809
WBVar02123725
gk962663
WBVar02121335
WBVar02120537
WBVar02123547
WBVar02122046
WBVar00072630
WBVar00072626
WBVar00072627
WBVar00072628
WBVar00072629
WBVar01544129
WBVar01544128
WBVar01544127
WBVar01544126
WBVar01544131
WBVar01544130
WBVar01544119
WBVar01544118
WBVar01544117
WBVar01544116

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219632 20217904 20219148 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20219149..20219300   152 V: 20219149-20219300 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly decreased expression in alh-4(hj221) deletion allele comparing to in N2. N.A. WBPaper00061653:alh-4(hj221)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219632 20217904 20219148 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1245

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_20215298..20217903   2606 V: 20215298-20217903 Caenorhabditis elegans