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UVC-EtBr-exposed(exposed to 7.5 J/m2 UVC radiation 3 times, 24 h apart (48 h total) and exposed to EtBr (5ug/mL in agar).) vs EtBr-exposed(maintained under normal lab light (mostly dark, in incubators) and exposed to EtBr (5ug/mL in agar).) at just prior to the second UVC dose (24h). |
Genes differentially expressed under UVC exposure and EtBr treatment vs under EtBr treatment but without UVC exposure at the -25h timepoint (just prior to the second UVC dose (24h)). |
Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first. |
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_24h
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Genome-wide analysis of developmental and sex-regulated gene expression profile. |
self-organizing map |
cgc4489_group_14
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Transcripts that showed significantly decreased expression in daf-10(p821);dve-1(RNAi) animals comparing to daf-10(p821) animals injected with empty vector. |
fold change > 2, FDR < 0.01 |
WBPaper00067391:dve-1(RNAi)_downregulated_daf-10(p821)
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Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. |
Fold change > 2, p-value < 0.05. |
WBPaper00060661:sensory-neuron_enriched
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Single-cell RNA-Seq cell group 70_1 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:70_1
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heat-killed OP50 |
Transcripts that showed significantly decreased expression in N2 L1 animals fed with heat-killed OP50 for 4 hours comparing to those animals fed with OP50. |
DESeq2, fold change > 2, FDR < 0.05. |
WBPaper00067214:Heat-Killed-OP50_downregulated
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Single-cell RNA-Seq cell group 20_1 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:20_1
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Bacteria infection: Pseudomonas aeruginosa PA14 |
Genes downregulated in worms grown on P. aeruginosa PA14 as compared to worms grown on OP50 for 4 hours by at least 2 fold and P < 0.01, as determined by a t-test. |
At least 2 fold and P < 0.01, as determined by a t-test. |
WBPaper00028789:PA14_vs_OP50_downregulated_4hr
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Single-cell RNA-Seq cell group 54_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:54_0
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Transcripts that showed more than 4 fold of expression in CB4856 comparing to in N2 animals. |
DESeq2, fold change > 4. |
WBPaper00053909:N2_vs_CB4856_downregulated
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Single-cell RNA-Seq cell group 20_0 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:20_0
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Single-cell RNA-Seq cell group 20_2 expressed in neuron. |
scVI 0.6.0 |
WBPaper00065841:20_2
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