WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201290 Gene Name  Y43F8A.9
Sequence Name  ? Y43F8A.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by cep-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 92
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201290

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y43F8A.9 Y43F8A.9 92   V: 19363909-19364000
 

Other

0 CDSs

0 RNAi Result

20 Allele

Public Name
gk963271
gk962705
gk963489
gk963304
WBVar02124642
gk963809
gk963637
WBVar02124842
WBVar02121908
WBVar02124282
WBVar02122044
WBVar02121484
WBVar02122706
WBVar02120531
WBVar02123481
WBVar02122402
WBVar01909207
WBVar02091524
WBVar01523364
WBVar02121324

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201290 19363909 19364000 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_19364001..19370488   6488 V: 19364001-19370488 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  ncRNAs with significantly decreased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_downregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201290 19363909 19364000 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
92

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_19362669..19363908   1240 V: 19362669-19363908 Caenorhabditis elegans