WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014702 Gene Name  C43D7.3
Sequence Name  ? C43D7.3 Organism  Caenorhabditis elegans
Automated Description  Enriched in Q cell based on RNA-seq studies. Is affected by several genes including smn-1; glh-4; and glh-1 based on RNA-seq studies. Is affected by five chemicals including rifampin; Psoralens; and Sirolimus based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1778
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014702

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

50 Allele

Public Name
gk963271
gk962705
gk963489
gk963304
WBVar02124642
gk963809
gk963637
WBVar02124842
WBVar02121908
WBVar02124282
WBVar02122044
WBVar02121484
WBVar02122706
WBVar02120531
WBVar02123481
WBVar02122402
gk356122
gk447623
gk444262
gk340724
gk720930
gk846239
gk674816
gk805416
gk782663
gk921072
gk648788
gk571633
gk815090
gk498749

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014702 19324105 19325882 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_19322488..19324104   1617 V: 19322488-19324104 Caenorhabditis elegans

11 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:eat-2(ad1116)_downregulated
  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(+), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
  Transcripts that showed significantly increased expression in smn-1(ok355) heterozygots using balancer hT2 comparing to in N2. DESeq v1.14.0, log2FC > 1, q <= 0.05. WBPaper00056809:smn-1(ok355)_upregulated
  Transcripts enriched in Q cell. DESeq2 (version 2.11.40.7) FDR < 0.05, fold change > 2. WBPaper00066652:Q-cell_enriched
  transcripts that showed significantly increased expression after N2 animals were exposed to 20 uM bortezomib for 4 hours. Differential expression analyses were performed using limma-voom in Galaxy. Fold change > 2, FDR < 0.05. WBPaper00062345:bortezomib_4h_upregulated_N2
  Transcripts that showed significantly decreased expression after 24 hours of induction of human beta Amyloid at young adult stage A 2-fold change in expression level and a false discovery rate analog of p < 0.05. WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
  Transcripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin, 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
  transcripts that showed significantly increased expression after zip-1(jy13) animals were exposed to 20 uM bortezomib for 4 hours. Differential expression analyses were performed using limma-voom in Galaxy. Fold change > 2, FDR < 0.05. WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
  Transcripts that showed significantly increased expression in skn-1(lax188) gain of function comparing to in N2 at day 2 adult stage. fold change > 2 WBPaper00058711:skn-1(lax188)_upregulated
  Transcripts that showed significantly decreased expression after exposure to 75uM paraquat(PQ) from L1 to day 2 adult stage in skn-1(lax188) animals fold change > 2 WBPaper00058711:paraquat_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014702 19324105 19325882 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1778

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_19325883..19327327   1445 V: 19325883-19327327 Caenorhabditis elegans