WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197339 Gene Name  Y51A2D.28
Sequence Name  ? Y51A2D.28 Organism  Caenorhabditis elegans
Automated Description  Enriched in M.vrpaapap; anal depressor muscle; and mu_int_L based on single-cell RNA-seq studies. Is affected by pgrn-1 and ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 297
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197339

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y51A2D.28 Y51A2D.28 297   V: 18581397-18581693
 

Other

0 CDSs

0 RNAi Result

22 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
gk963292
gk963480
gk963970
gk963971
WBVar02082882
WBVar00596956
WBVar01820890
WBVar02005080
WBVar01897455
otn7844
WBVar01749754
gk330715
gk549946
gk555867
WBVar01749753
WBVar01940805
WBVar01875585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197339 18581397 18581693 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18579785..18581396   1612 V: 18579785-18581396 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Single-cell RNA-Seq cell group 38_0 expressed in muscle. scVI 0.6.0 WBPaper00065841:38_0
  Single-cell RNA-Seq cell group 38_3 expressed in muscle. scVI 0.6.0 WBPaper00065841:38_3
  Genes differentially expressed in pgrn-1(tm985) and ced-3(n717) but not in ced-1(e1735) as compared to N2E. Differential expression analysis was performed using the EdgeR Bioconductor package (19910308), and differentially expressed genes were selected based on False Discovery Rate (FDR Benjamini Hochberg adjusted p-values) estimated at <=5%. WBPaper00044246:pgrn-1_ced-3_downregulated
  Single-cell RNA-Seq cell group 38_2 expressed in muscle. scVI 0.6.0 WBPaper00065841:38_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197339 18581397 18581693 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
297

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18581694..18582657   964 V: 18581694-18582657 Caenorhabditis elegans