WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077649 Gene Name  Y51A2B.11
Sequence Name  ? Y51A2B.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1; eat-2; and daf-2 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 951
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077649

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

46 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
gk962704
gk963970
gk963971
WBVar02124435
WBVar02123776
gk911977
gk615826
gk497788
gk605247
gk329735
gk802698
gk805408
gk470537
gk314443
gk394473
gk417681
WBVar01977540
h4809
WBVar01875427
gk262343
gk262342
gk262345
gk262344
WBVar01845880
WBVar01845881

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077649 18396187 18397137 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18397138..18397279   142 V: 18397138-18397279 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:eat-2(ad1116)_downregulated
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077649 18396187 18397137 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
951

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18395750..18396186   437 V: 18395750-18396186 Caenorhabditis elegans