WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014906 Gene Name  fbxa-109
Sequence Name  ? Y51A2A.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by wdr-5.1 and hlh-26 based on RNA-seq studies. Is affected by Alovudine based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :15.5262 ±0.08142 Length (nt)  ? 818
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014906

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

33 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
gk962704
WBVar02121660
WBVar02120716
WBVar02124434
gk963970
gk963971
WBVar02120865
WBVar02124140
WBVar02121045
WBVar02123536
WBVar02121311
gk716079
gk711391
gk351294
gk749159
gk695576
gk739793
tm10459
WBVar01875368
WBVar02082840
WBVar01638119
WBVar01638120
WBVar01638121
WBVar00224084
WBVar00224083

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014906 18309386 18310203 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18310204..18310923   720 V: 18310204-18310923 Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in exos-8(RNAi) animals. fold change > 2, FDR < 0.05 WBPaper00068292:exos-8(RNAi)_upregulated
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly increased expression in hlh-26(ok1453) animals exposed to E. faecium for 8 hours, comparing to N2 animals exposed to E. faecium for 8 hours. Fold change > 2. WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
  Transcripts that showed significantly decreased expression in shk-1(yum1003) comparing to in N2 animals. DESeq2 v1.36.0, fold change > 2, FDR < 0.05. WBPaper00067803:shk-1(yum1003)_downregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_downregulated
  Transcripts that showed significantly decreased expression in wdr-5(ok1417);skn-1(lax188) comparing to in skn-1(lax188) at day 2 adult stage. fold change > 2 WBPaper00058711:wdr-5(ok1417)_downregulated
  Transcripts that showed significantly altered expression after 24 hour exposure to stavudine (FLT) starting at L1 lava stage. DESeq WBPaper00053302:alovudine_72h_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014906 18309386 18310203 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
818

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18305572..18309385   3814 V: 18305572-18309385 Caenorhabditis elegans