Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y51A2A.7.1 | Y51A2A.7.1 |
345
 |
V: 18305181-18305571 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y51A2A.7 | Y51A2A.7 |
345
|
V: 18305181-18305336 |
22 Allele
| Public Name |
|---|
| gk963271 |
| gk963489 |
| gk963304 |
| gk963809 |
| gk963637 |
| gk962704 |
| WBVar02121660 |
| WBVar02120716 |
| WBVar02124434 |
| gk963970 |
| gk963971 |
| WBVar02120865 |
| WBVar02124140 |
| WBVar02121045 |
| WBVar02123536 |
| WBVar02121311 |
| WBVar02124840 |
| tm10459 |
| WBVar02124735 |
| WBVar02122702 |
| WBVar02075287 |
| WBVar02079528 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00013063 | 18305181 | 18305571 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_18304552..18305180 | 629 | V: 18304552-18305180 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| mRNAs that showed decreased expression in 1 cell mebryo comparing to in oocyte, according to RNAseq analysis. | Gaussian error propagation. As cutoff for the up-regulated genes authors used log2 fold change > 1 and P < 0.05 and as cutoff for the down-regulated genes authors used log2 fold change < -1 and P < 0.05. | WBPaper00045420:fertilization_downregulated_transcript | |
| Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. | DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. | WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult | |
| Transcripts that showed more than 4 fold of expression in CB4856 comparing to in N2 animals. | DESeq2, fold change > 4. | WBPaper00053909:N2_vs_CB4856_downregulated | |
| Transcripts that showed significantly decreased expression in cnd-1(ju29) comparing to in N2. | DESeq2 1.16.1 (R3.4.1) | WBPaper00059932:cnd-1(ju29)_downregulated |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1160564 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_18305572..18309385 | 3814 | V: 18305572-18309385 | Caenorhabditis elegans |
