WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077641 Gene Name  Y94A7B.12
Sequence Name  ? Y94A7B.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including clk-1; glh-4; and glh-1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 311
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077641

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

47 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
gk964050
gk962704
gk962630
WBVar01694187
WBVar01694189
WBVar01694188
WBVar01654232
WBVar02123312
WBVar02122042
WBVar02122265
WBVar02124138
WBVar02121803
WBVar02121308
WBVar02123148
WBVar02123939
WBVar02124274
WBVar02124508
WBVar00091141
WBVar02122868
WBVar02077126
WBVar00091254
WBVar01596207
WBVar01596206
WBVar01596205
WBVar01596204

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00077641 17813605 17813915 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17813916..17818866   4951 V: 17813916-17818866 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00077641 17813605 17813915 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
311

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17812795..17813604   810 V: 17812795-17813604 Caenorhabditis elegans