WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045506 Gene Name  F57G4.10
Sequence Name  ? F57G4.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1; meg-4; and meg-3 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species and FTH domain. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 1350
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045506

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F57G4.10.1 F57G4.10.1 438   V: 17628866-17630215
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57G4.10 F57G4.10 438   V: 17628866-17629234

0 RNAi Result

56 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
WBVar02124059
gk962704
gk962630
WBVar02124137
WBVar02121802
WBVar02123146
WBVar02122699
WBVar02124273
WBVar02122867
WBVar02122262
WBVar02121303
WBVar02121656
WBVar02124504
WBVar02124636
WBVar02077387
WBVar02123938
WBVar02123716
WBVar01812330
WBVar01812329
gk505029
gk438062
gk742374
gk803336
gk672695

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00045506 17628866 17630215 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17630216..17631547   1332 V: 17630216-17631547 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes with small RNAs downregulated in all four meg-3(ax3055) meg-4(ax3052) strains comparing to N2 DESeq2 WBPaper00057162:meg-3_meg-4_downregulated_sRNA
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr1152636 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015  

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00045506 17628866 17630215 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1350

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17627599..17628865   1267 V: 17627599-17628865 Caenorhabditis elegans