WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005377 Gene Name  srh-161
Sequence Name  ? F20E11.14 Organism  Caenorhabditis elegans
Automated Description  Enriched in ADLL and anchor cell based on RNA-seq and single-cell RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :12.9059 ±0.000168 Length (nt)  ? 1130
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005377

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

99 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124059
WBVar02124270
WBVar02122864
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962704
WBVar02122328
gk962630
WBVar02121298
WBVar02122699
WBVar02121656
WBVar02124636
WBVar02123716
gk962558
WBVar02124375
WBVar02079469
WBVar01692736
WBVar00091136
WBVar00091251

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00005377 17452676 17453805 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17453806..17454494   689 V: 17453806-17454494 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts enriched in invading anchor cells comparing to in whole animal. DESeq2v.1.30.1. fold change >= 2, FDR < 0.05 WBPaper00065258:anchor-cell_enriched
  Single-cell RNA-Seq cell group 81_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:81_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00005377 17452676 17453805 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1130

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17452132..17452675   544 V: 17452132-17452675 Caenorhabditis elegans