Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F20E11.18b.1 | F20E11.18b.1 |
327
 |
V: 17435678-17436592 |
| Transcript:F20E11.18a.1 | F20E11.18a.1 |
348
|
V: 17435678-17436592 |
Other
2 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F20E11.18b | F20E11.18b |
327
|
V: 17435678-17435902 |
| CDS:F20E11.18a | F20E11.18a |
348
|
V: 17435678-17435923 |
56 Allele
| Public Name |
|---|
| gk963271 |
| gk963489 |
| gk963304 |
| gk963637 |
| WBVar02123303 |
| gk964050 |
| gk963587 |
| gk963588 |
| WBVar02124497 |
| WBVar02124059 |
| WBVar02124270 |
| WBVar02122864 |
| WBVar02121796 |
| WBVar02123142 |
| WBVar02124430 |
| WBVar02122255 |
| gk962704 |
| WBVar02122328 |
| gk962630 |
| WBVar02121298 |
| gk962558 |
| WBVar02124375 |
| WBVar02079469 |
| WBVar00091136 |
| WBVar02121655 |
| WBVar02124271 |
| WBVar02122865 |
| WBVar02121800 |
| WBVar02124498 |
| WBVar02121299 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00206495 | 17435678 | 17436592 | -1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_17435210..17435677 | 468 | V: 17435210-17435677 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes with expression level regulated by genotype (N2 vs CB4856) and age at old adults stage (214 hours at 24 centigrade). | For model 2, authors used 100 permutations to estimate the FDR threshold. Per permutation, genotypes and ages were independently randomly distributed, keeping the among-gene structure intact. Then for each spot (23,232) on the array, model 2 was tested. The obtained P-values were used to estimate a threshold for each of the explanatory factors. Authors also used a genome-wide threshold of -log10 P-value = 2, which resembles an FDR of 0.072 and 0.060 for marker and the interaction age-marker for the developing worms and FDR of 0.050 and 0.065 for marker and age-marker for the aging worms. For the physiological age effect, authors used a log10 P-value = 8 in developing worms (0.012 FDR) and -log10 P-value = 6 (0.032 FDR). | WBPaper00040858:eQTL_age_regulated_aging | |
| Genes with expression 1.5X depleted in PVD and OLL neurons. | Data sets were normalized by RMA and transcripts showing relative PVD enrichment (>=1.5X) vs. the reference sample were identified by SAM analysis (False Discovery Rate, FDR < 1%) | WBPaper00036375:depleted_in_PVD_OLL | |
| Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh6), triggered by the dafachronic acid (DA) growth hormone. Cluster 4 genes increased expression transiently during dauer commitment. | Benjamini Hochberg corrected q-value < 0.01. | WBPaper00053388:dauer_regulated_Cluster4 | |
| Transcripts that showed significantly decreased expression in AMsh glia cells of che-2(e1033). | fold-change cut offs of >2, and an adjusted p-value threshold of < 0.05. | WBPaper00067618:che-2(e1033)_downregulated_AMsh |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1149074 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_17436593..17436984 | 392 | V: 17436593-17436984 | Caenorhabditis elegans |
