WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044096 Gene Name  srh-96
Sequence Name  ? T27C5.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including csr-1; glh-4; and glh-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :12.8981 ±0.000524 Length (nt)  ? 1143
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044096

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

54 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124059
WBVar02124270
WBVar02122864
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962704
WBVar02122328
gk962630
gk963919
WBVar02121298
gk962558
WBVar02124375
WBVar02079469
gk260170
WBVar00091136
WBVar02076190
WBVar01636528
WBVar01636529
gk260171

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00044096 17419156 17420298 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17420299..17423251   2953 V: 17420299-17423251 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
  Transcripts that showed significantly increased expression in csr-1(RNAi) comparing to in N2 animals fed wth empty vector. DESeq2 v1.20.0,, fold change > 2, FDR < 0.05. WBPaper00066919:csr-1(RNAi)_upregulated
  Transcripts that showed significantly increased expression in cat-2(e1112);odIs77 comparing to in odIs77 control animals. EdgeR, FDR<0.01 WBPaper00060921:cat-2(e1112)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00044096 17419156 17420298 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1143

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17418781..17419155   375 V: 17418781-17419155 Caenorhabditis elegans