WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077476 Gene Name  rrn-4.13
Sequence Name  ? Y102A5D.11 Brief Description  rrn-4.13 (Y102A5D.11) encodes a 5s ribosomal RNA (rRNA), a component of the large ribosomal subunit and synthesised by RNA polymerase III; As this forms a major component of the ribosome, it is essential for all protein synthesis in the cell.
Organism  Caenorhabditis elegans Biotype  SO:0001637
Genetic Position  V :12.8021± Length (nt)  ? 119
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077476

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y102A5D.11 Y102A5D.11 119   V: 17130362-17130480
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00019318

23 Allele

Public Name
gk963271
gk963489
gk963304
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124059
WBVar02124270
WBVar02122864
gk964305
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962630
WBVar02121797
WBVar02121297
WBVar02122692
WBVar02121644
WBVar02121646
WBVar02124731

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00077476 17130362 17130480 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17130481..17131063   583 V: 17130481-17131063 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly increased expression after 24 hours of infection by Pseudomonas donghuensis HYS, comparing to control animals exposed to OP50. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:HYS_vs_OP50_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00077476 17130362 17130480 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
119

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17130186..17130361   176 V: 17130186-17130361 Caenorhabditis elegans