Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:ZK218.23 | ZK218.23 |
104
 |
V: 17115526-17115629 |
Other
22 Allele
| Public Name |
|---|
| gk963271 |
| gk963489 |
| gk963304 |
| WBVar02123303 |
| gk964050 |
| gk963587 |
| gk963588 |
| WBVar02124497 |
| WBVar02124059 |
| WBVar02124270 |
| WBVar02122864 |
| gk964305 |
| WBVar02121796 |
| WBVar02123142 |
| WBVar02124430 |
| WBVar02122255 |
| gk962630 |
| tm1324 |
| WBVar02043959 |
| WBVar01875120 |
| WBVar01875121 |
| ttTi10727 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00220239 | 17115526 | 17115629 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_17115630..17115902 | 273 | V: 17115630-17115902 | Caenorhabditis elegans |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals. | DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. | WBPaper00060014:set-2(tm1630)_upregulated | |
| Bacteria: C.neoformans strain H99 | Transcripts that showed significantly increased expression after infection by C. neoformans H99. | Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05. | WBPaper00059754:C.neoformans_H99_upregulated |
| Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis. | edgeR fold change >= 2, FDR <= 0.05. | WBPaper00059440:LAG-1_interacting_germline | |
| Transcripts that showed significantly increased expression in Q cells isolated from mab-5(e1239) animals, comparing to Q cells isolated from N2 animals. | DESeq2 (version 2.11.40.7) FDR < 0.05, log2 fold change > 1.5 or < -1.5. | WBPaper00066652:mab-5(e1239)_upregulated_Q-cell |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_17114888..17115525 | 638 | V: 17114888-17115525 | Caenorhabditis elegans |
