WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005466 Gene Name  srh-260
Sequence Name  ? Y32B12A.7 Organism  Caenorhabditis elegans
Automated Description  Enriched in ASHL based on single-cell RNA-seq studies. Is affected by sir-2.1 based on microarray studies. Biotype  SO:0000336
Genetic Position  V :10.1529 ±0.006461 Length (nt)  ? 1289
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005466

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

83 Allele

Public Name
gk963271
WBVar02123303
WBVar02124908
WBVar02123708
WBVar02124497
WBVar02124626
WBVar02124059
WBVar02121634
gk963302
WBVar02124428
WBVar02122859
WBVar02124265
WBVar02121290
WBVar02107679
gk726512
gk926048
gk444652
gk334376
WBVar02091204
WBVar01593524
WBVar01593523
WBVar01634125
WBVar01593522
WBVar00038180
WBVar01634126
WBVar01593521
WBVar01593520
WBVar00038185
gk401172
gk893515

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005466 16492170 16493458 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Reduced humidity (98% relative humidity). Genes that were down-regulated after one day exposure to reduced humidity (98% relative humidity) according to microarray analysis. Multiple hypothesis testing with the Benjamini-Hochberg correction was applied on calculated p-values. A change in the expression level was considered to be significant if the adjusted p-value was less than 0.001. WBPaper00044578:reduced-humidity_downregulated_microarray
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated
  Transcripts that showed significantly increased expression in natural variant RC301(that showed resistance towards bacteria infection) vs. natural variant DA650, after 4 hour of infection by P. aeruginosa PA14. Fold change > 2, p-value < 0.05. WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
  Single-cell RNA-Seq cell group 47_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:47_1
Bacteria infection: Pseudomonas aeruginosa PA14 Genes up regulated by P. aeruginosa Infection. Two-way ANOVA WBPaper00028482:PA14_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005466 16492170 16493458 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1289

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16491548..16492169   622 V: 16491548-16492169 Caenorhabditis elegans