WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045140 Gene Name  T06C12.16
Sequence Name  ? T06C12.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including ptl-1; ptrn-1; and ilc-17.1 based on RNA-seq studies. Biotype  SO:0001267
Genetic Position  :± Length (nt)  ? 72
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045140

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T06C12.16 T06C12.16 72   V: 15873855-15873926
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk963271
gk964458
gk964459
WBVar02124261
tm11424
WBVar02122681
gk633599
gk520640
WBVar02124625

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00045140 15873855 15873926 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15873771..15873854   84 V: 15873771-15873854 Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly increased expression in efa-6(tm3124) comparing to in N2 DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. WBPaper00056039:efa-6(tm3124)_upregulated
  Transcripts that showed significantly increased expression in ptl-1(ok621) comparing to in N2 DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. WBPaper00056039:ptl-1(ok621)_upregulated
  Proteins interacting with mKate-IFE-1 via LC-MS-MS. fold change > 2, FDR < 0.05 WBPaper00067908:IFE-1_interacting
  mRNAs that showed significantly increased expression in polysomal fractions in N2 comparing to in daf-2(e1370), according to RNAseq study. Differentially expressed genes were determined using cuffdiff across all pairs. WBPaper00046337:polysomal_N2_vs_daf-2_upregulated
  Proteins interacting with GFP-IFE-3 via LC-MS-MS. fold change > 2, FDR < 0.05 WBPaper00067908:IFE-3_interacting
  Transcripts that showed significantly increased expression in ptrn-1(tm5597) comparing to in N2 DESeq2 1.14.1, fold change > 1.5, p-value < 0.01. WBPaper00056039:ptrn-1(tm5597)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00045140 15873855 15873926 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
72

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15873927..15874092   166 V: 15873927-15874092 Caenorhabditis elegans