WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077596 Gene Name  K06B4.17
Sequence Name  ? K06B4.17 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 and qui-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 761
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077596

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

27 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk964389
gk963695
WBVar02120713
WBVar02123297
WBVar02123132
WBVar02124260
h11324
h3461
WBVar02076153
WBVar02078175
WBVar02079296
gk256315
WBVar02109450
gk933955
gk891317
gk873667
gk405813
gk702596
WBVar00022910
WBVar01745582
WBVar01745583
WBVar01745584
WBVar01745585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00077596 15680156 15680916 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15680075..15680155   81 V: 15680075-15680155 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. WBPaper00062520:qui-1(db104)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00077596 15680156 15680916 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
761

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15680917..15685715   4799 V: 15680917-15685715 Caenorhabditis elegans