WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014846 Gene Name  T26H5.6
Sequence Name  ? T26H5.6 Organism  Caenorhabditis elegans
Automated Description  Enriched in XXXL based on single-cell RNA-seq studies. Is affected by clk-1; daf-2; and daf-16 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1535
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014846

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

55 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
WBVar02122853
WBVar02124135
WBVar02123700
WBVar02124726
WBVar02122679
WBVar02123128
gk963607
WBVar02123773
WBVar02121279
WBVar02121481
WBVar02123532
gk962910
WBVar02123601
gk964292
WBVar02124374
gk964181
gk964389
WBVar02120863
tm10675
WBVar02024836
WBVar02076149
WBVar02032172
WBVar02032170
WBVar02032171
gk255772
gk255774

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014846 15438798 15440332 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15438625..15438797   173 V: 15438625-15438797 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-2(e1370)_upregulated_neuron
  Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-16(mu86)_upregulated_neuron
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Single-cell RNA-Seq cell group 40_0 expressed in endocrine. scVI 0.6.0 WBPaper00065841:40_0
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014846 15438798 15440332 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1535

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15440333..15441323   991 V: 15440333-15441323 Caenorhabditis elegans