WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077440 Gene Name  Y75B12B.14
Sequence Name  ? Y75B12B.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and hmg-3 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1458
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077440

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

22 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
WBVar01710429
WBVar02024743
gk963976
WBVar02121277
gk961157
WBVar02032099
gk255338
gk255339
gk255337
gk255336
gk406309
gk490600
gk691998
gk837741
gk466299
gk810418
WBVar01800244
WBVar01744796

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077440 15205095 15206552 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15206553..15207087   535 V: 15206553-15207087 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Transcripts that showed significantly decreased expression in BAT525 [hmg-3 (tm2539) / dpy-5(e61) unc-13(e1091) I.] comparing to in N2 at 1-day post L4 adult hermaphrodite stage DESeq 2, fold change > 4, adjusted p-value < 0.05. WBPaper00055013:hmg-3(bar24)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077440 15205095 15206552 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1458

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15203719..15205094   1376 V: 15203719-15205094 Caenorhabditis elegans