WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005276 Gene Name  srh-53
Sequence Name  ? T09F5.15 Organism  Caenorhabditis elegans
Automated Description  Enriched in AS neuron; AS1; and anchor cell based on RNA-seq and single-cell RNA-seq studies. Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :7.4691 ±0.002516 Length (nt)  ? 1525
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005276

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

29 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
WBVar02024729
h10963
gk746539
gk531860
gk427102
gk707389
WBVar00018815
WBVar01744745
WBVar01463279
gk762199
gk720880
gk906832
gk824987
gk691000
gk712845
WBVar02077892
WBVar01775737
WBVar01775738
gk255223
gk255222
gk255221
gk255220
WBVar01809106
WBVar01809108
WBVar01809107

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00005276 15151845 15153369 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15153370..15153576   207 V: 15153370-15153576 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts enriched in invading anchor cells comparing to in whole animal. DESeq2v.1.30.1. fold change >= 2, FDR < 0.05 WBPaper00065258:anchor-cell_enriched
  Single-cell RNA-Seq cell group 132_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:132_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00005276 15151845 15153369 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1525

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15151639..15151844   206 V: 15151639-15151844 Caenorhabditis elegans