WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219553 Gene Name  T08G5.19
Sequence Name  ? T08G5.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by sams-3 and sams-4 based on RNA-seq studies. Biotype  SO:0002182
Genetic Position  :± Length (nt)  ? 1605
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Quick Links:
SummaryGenomicsOther
 
Lists
This Gene is in one list:
metrics_list_union (10192)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219553

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T08G5.19 T08G5.19 952   V: 14043544-14045148
 

Other

0 CDSs

7 RNAi Result

WormBase ID
WBRNAi00042984
WBRNAi00013790
WBRNAi00015780
WBRNAi00015783
WBRNAi00015951
WBRNAi00018470
WBRNAi00112642

8 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
tm3689
gk986
gk956

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219553 14043544 14045148 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_14040235..14043543   3309 V: 14040235-14043543 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Starvation for 8 hours at mid-L4 larva stage. Transcripts that showed significantly increased expression in zip-2(tm4248) animals starved for 8 hours on unseeded plate at mid-L4 larva stage. Differential expression analysis was performed using the quasi-likelihood F-test with the generalized linear model (GLM) approach in edgeR. Fold change > 2, FDR < 0.05. WBPaper00067829:starvation_upregulated_zip-2(tm4248)
  Transcripts that showed significantly increased expression in sams-3(RNAi) comparing to N2 animals injected with empty vector. Deseq FDR < 0.01, fold change > 2. WBPaper00065005:sams-3(RNAi)_upregulated
  Transcripts that showed significantly increased expression in sams-4(RNAi) comparing to N2 animals injected with empty vector. Deseq FDR < 0.01, fold change > 2. WBPaper00065005:sams-4(RNAi)_upregulated
Starvation for 8 hours at mid-L4 larva stage. Transcripts that showed significantly increased expression in cep-1(gk138) animals starved for 8 hours on unseeded plate at mid-L4 larva stage. Differential expression analysis was performed using the quasi-likelihood F-test with the generalized linear model (GLM) approach in edgeR. Fold change > 2, FDR < 0.05. WBPaper00067829:starvation_upregulated_cep-1(gk138)
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated
Mating for 24 hours with oleic acid supplement. Transcripts that showed significantly increased expression after glp-1(e2141) hermaphrodites mated for 24 hours with oleic acid supplement. Two-class SAM analysis WBPaper00061572:oleic-acid-specific_mating_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219553 14043544 14045148 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1605

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region