WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08G5.5b.1 Sequence Name  T08G5.5b.1
Length (nt)  3074   Chromosome Location  V: 14034323-14038372
Chromosome . Primary Identifier  V Chromosome Location . Start  14034323
Chromosome Location . End  14038372 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G5.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5b T08G5.5b 2781   V: 14034593-14034805

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T08G5.5b.1 14034323 14038372 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon206200   483   V: 14034323-14034805 Caenorhabditis elegans
Exon206206   593   V: 14035405-14035997 Caenorhabditis elegans
Exon206209   532   V: 14036045-14036576 Caenorhabditis elegans
Exon206215   290   V: 14036622-14036911 Caenorhabditis elegans
Exon206217   369   V: 14036956-14037324 Caenorhabditis elegans
Exon206221   293   V: 14037377-14037669 Caenorhabditis elegans
Exon206225   143   V: 14037714-14037856 Caenorhabditis elegans
Exon206229   209   V: 14037905-14038113 Caenorhabditis elegans
Exon206233   66   V: 14038164-14038229 Caenorhabditis elegans
Exon206237   96   V: 14038277-14038372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T08G5.5b.1 14034323 14038372 -1

1 Sequence

Length
3074

1 Sequence Ontology Term

Identifier Name Description
transcript