WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077572 Gene Name  T08G5.14
Sequence Name  ? T08G5.14 Organism  Caenorhabditis elegans
Automated Description  Enriched in AWBL based on single-cell RNA-seq studies. Is affected by several genes including hyl-1; ints-8; and alg-1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1110
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077572

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

19 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
WBVar02062153
gk252849
gk850751
gk423539
gk898372
gk655447
gk323476
gk662335
WBVar01842684
WBVar01842683
WBVar01462756
WBVar01462757
WBVar01462755
WBVar01744293

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00077572 14020628 14021737 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_14020389..14020627   239 V: 14020389-14020627 Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Genes with expression level regulated by genotype (N2 vs CB4856) at Old adults stage (214 hours at 24 centigrade). Authors permuted transcript values and used a genome-wide threshold of log10 P-value = 2, which resembles a false discovery rate (FDR) of 0.0136. WBPaper00040858:eQTL_regulated_old
Feeding for 4 hours after L1 arrest. Transcripts that showed significantly decreased expression after 4 hours of feeding of starvation-induced arrested L1 N2 animals, comparing to animals continue to starve. DESeq2, FDR < 0.05, fold change > 2. WBPaper00067518:food_downregulated_N2
Feeding for 4 hours after L1 arrest. Transcripts that showed significantly decreased expression after 4 hours of feeding of starvation-induced arrested L1 rsks-1(ok1255) animals, comparing to animals continue to starve. DESeq2, FDR < 0.05, fold change > 2. WBPaper00067518:food_downregulated_rsks-1(ok1255)
  Genes upregulated by alg-1(-). t-statistic difference of > 2.5 with p < 0.01. WBPaper00035588:alg-1(-)_upregulated
  Probe sets that showed significant decreased expression in CerS(rf) [lagr-1(gk327); hyl-1(ok976)] compared with N2 animals during L1 starvation. t-test, p-value < 0.01, fold change >= 2.0. WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_downregulated
  Genes with significantly decreased expression in lin-35(n745) comparing to in N2 in starvation condition. Statistical t-test: P < 0.015 for lin-35(n745) analysis with a threshold of 2-fold ratio of mis-regulation. WBPaper00048637:lin-35(n745)_starvation_downregulated
  Single-cell RNA-Seq cell group 101_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:101_0
  Transcripts that showed significantly increased expression in ints-8(RNAi) comparing to in N2. DESeq2 and edgeR. WBPaper00056284:ints-8(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00077572 14020628 14021737 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1110

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_14021738..14022139   402 V: 14021738-14022139 Caenorhabditis elegans