WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200822 Gene Name  F09F3.17
Sequence Name  ? F09F3.17 Organism  Caenorhabditis elegans
Automated Description  Is affected by vit-5 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 146
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200822

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F09F3.17 F09F3.17 146   V: 13868953-13869098
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
gk962861

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00200822 13868953 13869098 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_13869099..13869887   789 V: 13869099-13869887 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in vit-5(RNAi) comparing to in N2 animals injected with empty vector. DESeq R package (1.18.0), P < 0.05 and fold change > 2 WBPaper00064939:vit-5(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00200822 13868953 13869098 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
146

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_13868925..13868952   28 V: 13868925-13868952 Caenorhabditis elegans