WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F3.1a.1 Sequence Name  F54F3.1a.1
Length (nt)  4997   Chromosome Location  V: 12910113-12917198
Chromosome . Primary Identifier  V Chromosome Location . Start  12910113
Chromosome Location . End  12917198 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003738 nid-1 F54F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F3.1a F54F3.1a 4755   V: 12910118-12910222

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54F3.1a.1 12910113 12917198 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon203083   110   V: 12910113-12910222 Caenorhabditis elegans
Exon203084   366   V: 12910652-12911017 Caenorhabditis elegans
Exon203087   167   V: 12911073-12911239 Caenorhabditis elegans
Exon203090   131   V: 12911287-12911417 Caenorhabditis elegans
Exon203093   300   V: 12911463-12911762 Caenorhabditis elegans
Exon203096   251   V: 12911854-12912104 Caenorhabditis elegans
Exon203099   313   V: 12912217-12912529 Caenorhabditis elegans
Exon203102   929   V: 12912839-12913767 Caenorhabditis elegans
Exon203105   124   V: 12913823-12913946 Caenorhabditis elegans
Exon203108   144   V: 12913992-12914135 Caenorhabditis elegans
Exon203111   171   V: 12914221-12914391 Caenorhabditis elegans
Exon203112   97   V: 12914441-12914537 Caenorhabditis elegans
Exon203114   497   V: 12914770-12915266 Caenorhabditis elegans
Exon203116   243   V: 12915313-12915555 Caenorhabditis elegans
Exon203118   691   V: 12915816-12916506 Caenorhabditis elegans
Exon203122   463   V: 12916736-12917198 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54F3.1a.1 12910113 12917198 1

1 Sequence

Length
4997

1 Sequence Ontology Term

Identifier Name Description
transcript