WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00194786 Gene Name  ZC455.13
Sequence Name  ? ZC455.13 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position  :±
Length (nt)  ? 2300
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00194786

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

47 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
WBVar02061547
WBVar02061548
WBVar01743741
gk529869
gk963694
gk444623
gk450669
gk963693
WBVar01868378
gk859258
WBVar01868379
gk515622
gk936372
gk734953
WBVar00011070
WBVar01868377
gk492839
gk601554
gk816431
WBVar01808888
gk496728
gk830439
gk376242
gk432747
gk515623
gk350532

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00194786 12800734 12803033 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_12803034..12803573   540 V: 12803034-12803573 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly increased expression after 24 hours of infection by Pseudomonas donghuensis HYS, comparing to control animals exposed to OP50. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:HYS_vs_OP50_upregulated
Bacteria: Pseudomonas donghuensis HYS Transcripts that showed significantly decreased expression after 24 hours of infection by Pseudomonas donghuensis HYS with deletion of ferric uptake regulator (FUR), comparing to control animals exposed to HYS. DESeq2, fold change > 2, FDR < 0.05. WBPaper00068216:FUR_vs_HYS_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00194786 12800734 12803033 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2300

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_12800272..12800733   462 V: 12800272-12800733 Caenorhabditis elegans