WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200754 Gene Name  F45D3.12
Sequence Name  ? F45D3.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by lin-29 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 148
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200754

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F45D3.12 F45D3.12 148   V: 12556952-12557099
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk963618
gk674049

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00200754 12556952 12557099 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_12554638..12556951   2314 V: 12554638-12556951 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in lin-29(n333) comparing to in N2 at day 1 adult stage. DESeq2, FDR < 0.01, fold change > 2. WBPaper00066970:lin-29(n333)_upregulated
  Transcripts that showed significantly increased expression in MT333 lin-29(n333) comparing to in N2 animals. DESeq2, fold change > 2, FDR < 0.01. WBPaper00067704:lin-29(n333)_upregulated
  Transcripts that showed significantly depleted expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm. Fold change > 2, p-value < 0.05. WBPaper00060661:sensory-neuron_depleted

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00200754 12556952 12557099 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
148

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_12557100..12558011   912 V: 12557100-12558011 Caenorhabditis elegans