WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57F5.5a.3 Sequence Name  F57F5.5a.3
Length (nt)  3365   Chromosome Location  V: 12014383-12032079
Chromosome . Primary Identifier  V Chromosome Location . Start  12014383
Chromosome Location . End  12032079 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57F5.5a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004032 pkc-1 F57F5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57F5.5a F57F5.5a 2124   V: 12015456-12015602

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F57F5.5a.3 12014383 12032079 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200358   1220   V: 12014383-12015602 Caenorhabditis elegans
Exon200364   147   V: 12016147-12016293 Caenorhabditis elegans
Exon200369   328   V: 12016338-12016665 Caenorhabditis elegans
Exon200374   155   V: 12016865-12017019 Caenorhabditis elegans
Exon200379   308   V: 12017067-12017374 Caenorhabditis elegans
Exon200384   61   V: 12017733-12017793 Caenorhabditis elegans
Exon200389   112   V: 12018283-12018394 Caenorhabditis elegans
Exon200394   259   V: 12018498-12018756 Caenorhabditis elegans
Exon200399   204   V: 12019234-12019437 Caenorhabditis elegans
Exon200413   196   V: 12023603-12023798 Caenorhabditis elegans
Exon200417   108   V: 12023849-12023956 Caenorhabditis elegans
Exon200421   121   V: 12024040-12024160 Caenorhabditis elegans
Exon200427   146   V: 12031934-12032079 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F57F5.5a.3 12014383 12032079 -1

1 Sequence

Length
3365

1 Sequence Ontology Term

Identifier Name Description
transcript