WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197583 Gene Name  T26H10.4
Sequence Name  ? T26H10.4 Organism  Caenorhabditis elegans
Automated Description  Enriched in RIGL; RIH; RIR; and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by cep-1 and daf-2 based on RNA-seq and microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 205
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197583

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T26H10.4 T26H10.4 205   V: 11433428-11433632
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk963271
gk963301
gk964451
gk964452

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197583 11433428 11433632 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_11433633..11433695   63 V: 11433633-11433695 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Single-cell RNA-Seq cell group 142_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:142_0
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal
  Single-cell RNA-Seq cell group 122_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:122_0
  Single-cell RNA-Seq cell group 128_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:128_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197583 11433428 11433632 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
205

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_11433418..11433427   10 V: 11433418-11433427 Caenorhabditis elegans