WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199177 Gene Name  T26H10.6
Sequence Name  ? T26H10.6 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by cep-1; met-2; and lpd-3 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 176
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199177

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T26H10.6 T26H10.6 176   V: 11427809-11427984
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963271
gk963301
gk964451
gk964452
gk644422
gk642352
WBVar01461776
WBVar01461777

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199177 11427809 11427984 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_11427985..11428939   955 V: 11427985-11428939 Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_upregulated
  Single-cell RNA-Seq cell group 96_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:96_0
  ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq. ncRNAs with more than 2 fold difference in expression are considered differentially expressed WBPaper00045380:cep-1(gk138)_upregulated_normal
  Transcripts that showed significantly increased expression in met-2(n4256) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:met-2(n4256)_upregulated
  Single-cell RNA-Seq cell group 80_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:80_0
  Single-cell RNA-Seq cell group 53_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:53_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199177 11427809 11427984 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
176

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_11426784..11427808   1025 V: 11426784-11427808 Caenorhabditis elegans