WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00199121 Gene Name  F22E12.9
Sequence Name  ? F22E12.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by silicon dioxide nanoparticle based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 145
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00199121

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F22E12.9 F22E12.9 145   V: 10466680-10466824
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963301
gk963495
gk963496
gk964351
gk962860
gk964304
WBVar01864848
gk689394

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00199121 10466680 10466824 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs). The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group. WBPaper00060100:SiNP_upregulated_mRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00199121 10466680 10466824 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
145

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_10466825..10467020   196 V: 10466825-10467020 Caenorhabditis elegans