WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014674 Gene Name  C12D8.2
Sequence Name  ? C12D8.2 Organism  Caenorhabditis elegans
Automated Description  Enriched in AFDL based on single-cell RNA-seq studies. Is affected by daf-2; eat-2; and ogt-1 based on microarray and RNA-seq studies. Is affected by triclosan based on microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 414
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014674

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

21 Allele

Public Name
gk963301
gk963495
gk963496
otn8934
gk964351
gk962860
gk964304
gk962746
WBVar02076127
otn18338
otn18339
WBVar01924756
otn18340
gk244987
gk314755
WBVar01864545
gk244988
WBVar00000955
WBVar01742978
gk690100
gk797757

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014674 10230258 10230671 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_10230164..10230257   94 V: 10230164-10230257 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed significantly decreased expression after 24 hour exposure to 20umol/l Triclosan at L4 larva stage. Fold change > 2, p-value < 0.05. WBPaper00051387:Triclosan_downregulated
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated
  Single-cell RNA-Seq cell group 35_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:35_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014674 10230258 10230671 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
414

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_10230672..10231231   560 V: 10230672-10231231 Caenorhabditis elegans