WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00003350 Gene Name  mir-256
Sequence Name  ? T07H8.8 Brief Description  mir-256 encodes a microRNA, a small non-protein coding RNA; based on RNA sequence identity mir-256 belongs to the mir-1 family of microRNAs that includes mir-1, Drosophila mir-1 and mouse mir-1b and mir-206; mir-256 is uniformly expressed from the embryonic stage to the adult stage; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-256 is unknown.
Organism  Caenorhabditis elegans Biotype  SO:0001265
Genetic Position  V :0.481724 ±0.000492 Length (nt)  ? 101
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00003350

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T07H8.8b T07H8.8b 21   V: 6956058-6956078
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk963301
gk963553
gk964259
gk964351
gk963850
gk964527
gk962860
gk964528
n4471
tm2293
gk793836
gk466756

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00003350 6956043 6956143 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_6953898..6956042   2145 V: 6953898-6956042 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
space radition and microgravity Micro RNAs that showed decreased expression in space flight N2 samples comparing to in ground control, affected by space radition and microgravity. Differentially expressed miRNAs (>1.5-fold change and <0.67) and mRNAs (>2-fold change and <0.5) were identified through fold-change filtering. WBPaper00048474:SpaceRadiation-Microgravity_downregulated_N2
space radition Micro RNAs that showed decreased expression in space flight N2 samples (animals were put in a centrifugal device in space) comparing to in ground control, affected by space radition but not microgravity. Differentially expressed miRNAs (>1.5-fold change and <0.67) and mRNAs (>2-fold change and <0.5) were identified through fold-change filtering. WBPaper00048474:SpaceRadiation_downregulated_N2

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr10964    

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00003350 6956043 6956143 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
101

1 Sequence Ontology Term

Identifier Name Description
gene  

1 Strains

WormBase ID
WBStrain00027565

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_6956144..6956536   393 V: 6956144-6956536 Caenorhabditis elegans