WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197591 Gene Name  K08B12.9
Sequence Name  ? K08B12.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by dlc-1; daf-2; and ogt-1 based on RNA-seq and microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 211
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197591

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K08B12.9 K08B12.9 211   V: 6244807-6245017
 

Other

0 CDSs

0 RNAi Result

14 Allele

Public Name
gk963301
gk963591
gk963553
gk963042
gk963041
gk964259
gk964351
gk963850
gk236834
gk424278
gk515567
WBVar01651898
gk384723
gk478108

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197591 6244807 6245017 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_6245018..6246581   1564 V: 6245018-6246581 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing. DESeq2, fold change > 2,, p-value < 0.01 WBPaper00055334:DLC-1_interacting

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197591 6244807 6245017 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
211

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_6240018..6244806   4789 V: 6240018-6244806 Caenorhabditis elegans