WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006015 Gene Name  srx-124
Sequence Name  ? K09H11.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in AUA; MCL; anterior arcade cell; and head ganglion based on single-cell RNA-seq studies. Is affected by lpd-3; ogt-1; and sir-2.1 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  V :-1.08256 ±0.026009 Length (nt)  ? 2092
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006015

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

40 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar01973598
WBVar01973599
WBVar02023709
WBVar00209687
WBVar00209686
WBVar00209689
WBVar00209688
gk713358
gk352089
gk821307
WBVar01997967
WBVar01997968
WBVar01740312
WBVar01740313
WBVar01808105
ttTi38252
gk839635
gk803262
gk484550
gk826537
gk550196
gk567050
gk446126
gk587581

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00006015 5727502 5729593 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_5729594..5729691   98 V: 5729594-5729691 Caenorhabditis elegans

12 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
Osmotic stress Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present DESeq(version 1.10.1), FDR < 0.05. WBPaper00050726:OsmoticStress_regulated_Food
Starvation Transcripts that showed significantly altered expression by starvation with 100 mM salt (NaCl) DESeq(version 1.10.1), FDR < 0.05. WBPaper00050726:starvation_regulated_LowSalt
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Single-cell RNA-Seq cell group 30_5 expressed in glia. scVI 0.6.0 WBPaper00065841:30_5
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum Transcripts that showed significantly increased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum. GFold3, logFC < -1 or > 1. WBPaper00066703:L.plantarum-pdxH_upregulated
  Single-cell RNA-Seq cell group 142_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:142_0
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_6
  Single-cell RNA-Seq cell group 67_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:67_0
  Single-cell RNA-Seq cell group 90_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:90_0
  Transcripts that showed significantly decreased expression in lpd-3(ok2138) comparing to in N2 animals. DESeq2, fold change > 4, FDR < 0.05. WBPaper00064661:lpd-3(ok2138)_downregulated
  Transcripts enriched in AUA according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:AUA_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00006015 5727502 5729593 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2092

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_5726564..5727501   938 V: 5726564-5727501 Caenorhabditis elegans