WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271816 Gene Name  R02F11.12
Sequence Name  ? R02F11.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by sir-2.1 based on microarray studies. Is affected by resveratrol based on microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; C-type lectin fold; and Lectin C-type domain. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 807
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271816

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R02F11.12.1 R02F11.12.1 657   V: 4790668-4791474
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R02F11.12 R02F11.12 657   V: 4790668-4790734

2 RNAi Result

WormBase ID
WBRNAi00051145
WBRNAi00017330

20 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar01861595
gk773335
gk717050
gk418599
WBVar01650806
WBVar02121263
tm7696
gk233721
gk233722
gk233720
gk233725
gk233726
gk233723
gk233724

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00271816 4790668 4791474 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4791475..4791868   394 V: 4791475-4791868 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_15
Wounded by glass wool. Proteins that showed significantly increased expression immediately after wounded by glass wool. Fold change > 2 or < 0.5. WBPaper00061285:wounding_0h_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00271816 4790668 4791474 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
807

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4790046..4790667   622 V: 4790046-4790667 Caenorhabditis elegans