WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219652 Gene Name  linc-65
Sequence Name  ? C18G1.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by alh-4 based on RNA-seq studies. Is affected by paraquat based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  V :-4.24998± Length (nt)  ? 965
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219652

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C18G1.10 C18G1.10 236   V: 4759370-4760334
 

Other

0 CDSs

0 RNAi Result

14 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
gk233642
WBVar01800098
WBVar02059931
gk962665
WBVar01631015
gk411347
gk874862
WBVar02079241

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219652 4759370 4760334 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4758588..4759369   782 V: 4758588-4759369 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in N2 animals exposed to 0.1mM Paraquat from hatching to reaching adult stage. DESeq2 version 1.22.2, p < 0.05 WBPaper00064716:paraquat_downregulated
  Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline. Log2 Fold change > 2 or <-1, p-value < 0.05. WBPaper00053599:female_vs_male_downregulated
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly increased expression in alh-4(hj221) deletion allele comparing to in N2. N.A. WBPaper00061653:alh-4(hj221)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219652 4759370 4760334 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
965

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4760335..4760973   639 V: 4760335-4760973 Caenorhabditis elegans