WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F12.3a.1 Sequence Name  T28F12.3a.1
Length (nt)  5232   Chromosome Location  V: 4516944-4549291
Chromosome . Primary Identifier  V Chromosome Location . Start  4516944
Chromosome Location . End  4549291 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004947 sos-1 T28F12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F12.3a T28F12.3a 4482   V: 4517682-4517811

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T28F12.3a.1 4516944 4549291 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon179396   868   V: 4516944-4517811 Caenorhabditis elegans
Exon179398   114   V: 4518431-4518544 Caenorhabditis elegans
Exon179400   175   V: 4518599-4518773 Caenorhabditis elegans
Exon179402   264   V: 4519908-4520171 Caenorhabditis elegans
Exon179405   280   V: 4521760-4522039 Caenorhabditis elegans
Exon179407   123   V: 4522469-4522591 Caenorhabditis elegans
Exon179410   135   V: 4536192-4536326 Caenorhabditis elegans
Exon179412   420   V: 4537162-4537581 Caenorhabditis elegans
Exon179414   129   V: 4539158-4539286 Caenorhabditis elegans
Exon179416   81   V: 4539335-4539415 Caenorhabditis elegans
Exon179418   1054   V: 4540666-4541719 Caenorhabditis elegans
Exon179420   79   V: 4542422-4542500 Caenorhabditis elegans
Exon179422   250   V: 4542555-4542804 Caenorhabditis elegans
Exon179424   399   V: 4543528-4543926 Caenorhabditis elegans
Exon179426   252   V: 4545865-4546116 Caenorhabditis elegans
Exon179428   303   V: 4547570-4547872 Caenorhabditis elegans
Exon179430   87   V: 4548824-4548910 Caenorhabditis elegans
Exon179432   87   V: 4549021-4549107 Caenorhabditis elegans
Exon179435   132   V: 4549160-4549291 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T28F12.3a.1 4516944 4549291 -1

1 Sequence

Length
5232

1 Sequence Ontology Term

Identifier Name Description
transcript