WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00269437 Gene Name  Y47D7A.19
Sequence Name  ? Y47D7A.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by rrf-3; folr-1; and ogt-1 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 381
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00269437

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47D7A.19.1 Y47D7A.19.1 330   V: 4424351-4424731
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D7A.19 Y47D7A.19 234   V: 4424353-4424539

1 RNAi Result

WormBase ID
WBRNAi00020708

15 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar01588014
gk963723
gk963724
WBVar01973033
gk815502
gk380011
gk232885
gk232884
WBVar01677728

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00269437 4424351 4424731 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4424732..4426156   1425 V: 4424732-4426156 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_14
  Transcripts that showed significantly increased expression in rrf-3(pk1426) comparing to in N2 at L4 larva stage. DESeq2v 1.18.1, fold change > 1.5, adjusted p-value < 0.01. WBPaper00056169:rrf-3(pk1426)_upregulated_L4
  Transcripts that showed significantly decreased expression in folr-1(syb4116) comparing to in N2at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066375:folr-1(syb4116)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00269437 4424351 4424731 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
381

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4423961..4424350   390 V: 4423961-4424350 Caenorhabditis elegans