WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00269430 Gene Name  F47D2.12
Sequence Name  ? F47D2.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 924
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00269430

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

32 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
WBVar01587964
WBVar01587963
WBVar01587966
WBVar01587965
WBVar01587967
gk964431
gk647804
gk400780
gk366870
gk751521
gk532915
WBVar01459330
WBVar01459329
WBVar02121261
WBVar01459331
WBVar02004821
WBVar02004822
tm11322
gk232609
gk232607
gk232608
gk963023
WBVar02124231
WBVar01677256

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00269430 4282675 4283598 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4281800..4282674   875 V: 4281800-4282674 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00269430 4282675 4283598 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
924

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_4283599..4285036   1438 V: 4283599-4285036 Caenorhabditis elegans