WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219714 Gene Name  linc-3
Sequence Name  ? K12D9.16 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 based on microarray studies. Is affected by graphene oxide based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  V :-12.7963± Length (nt)  ? 393
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219714

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K12D9.16 K12D9.16 351   V: 3012695-3013087
 

Other

0 CDSs

0 RNAi Result

17 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk963850
gk963027
gk962689
gk962688
WBVar01586200
WBVar02124616
WBVar01614208
gk229837
WBVar02122646
gk964200
gk389106
gk799378
gk609263

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00219714 3012695 3013087 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_3013088..3014484   1397 V: 3013088-3014484 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh, triggered by the dafachronic acid (DA) growth hormone6). Cluster 2 genes' expression gradually increased into dauer. Benjamini Hochberg corrected q-value < 0.01. WBPaper00053388:dauer_regulated_Cluster2
  lncRNAs that showed increased expression after exposure to graphene oxide (GO) from L1 larva to young adulthood. N.A. WBPaper00049772:graphene-oxide_upregulated_lncRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00219714 3012695 3013087 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
393

1 Sequence Ontology Term

Identifier Name Description
gene  

1 Strains

WormBase ID
WBStrain00055035

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_3011495..3012694   1200 V: 3011495-3012694 Caenorhabditis elegans