WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023337 Gene Name  T03D3.9
Sequence Name  ? T03D3.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 and sir-2.1 based on RNA-seq and microarray studies. Is affected by resveratrol based on microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1224
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023337

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

33 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk963850
gk963027
gk962689
gk962688
WBVar01586028
WBVar01586027
WBVar00205111
WBVar00205110
tm10884
tm11497
WBVar02121464
WBVar01613780
WBVar01613783
WBVar01613784
WBVar01613781
WBVar01613782
WBVar01613785
WBVar01613786
WBVar01613779
WBVar01986139
WBVar02080242
gk229462
WBVar01630988
gk578480
gk700790
gk842985

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023337 2841018 2842241 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2840319..2841017   699 V: 2840319-2841017 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Developmentally modulated gene cluster. self-organizing map cgc4386_cluster_6_4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023337 2841018 2842241 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1224

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2842242..2842945   704 V: 2842242-2842945 Caenorhabditis elegans