WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023336 Gene Name  T03D3.8
Sequence Name  ? T03D3.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in head mesodermal cell based on RNA-seq studies. Is affected by clk-1 based on microarray studies. Is affected by resveratrol based on microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 1165
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023336

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

31 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk963850
gk963027
gk962689
gk962688
WBVar01586026
WBVar01586025
WBVar00205106
WBVar00205105
WBVar00205107
WBVar02124041
tm10884
tm11497
WBVar02121464
h16177
WBVar01613776
WBVar01613777
WBVar01986137
WBVar01986138
WBVar01738633
tm12063
gk229458
gk229459
gk386592
gk715459
gk325929
gk672987

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023336 2839154 2840318 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2838806..2839153   348 V: 2838806-2839153 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly lower expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc). DESeq2, fold change >= 2, FDR <= 0.01. WBPaper00056826:hmc_biased
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_9

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023336 2839154 2840318 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1165

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

1 Upstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_2840319..2841017   699 V: 2840319-2841017 Caenorhabditis elegans